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Xu, W., Rahman, R. & Rosbash, M. Mechanistic implications of enhanced editing by a HyperTRIBE RNA-binding protein. RNA 24, 173–182 (2018). Sugimoto, Y. et al. hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1. Nature 519, 491–494 (2015). NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Rep 4: 255–261. [ PMC free article] [ PubMed] [ Google Scholar] Krakau, S., Richard, H. & Marsico, A. PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data. Genome Biol. 18, 240 (2017).
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Wang, Q. et al. The PSI–U1 snRNP interaction regulates male mating behavior in Drosophila. Proc. Natl Acad. Sci. USA 113, 5269–5274 (2016).GENSAT BAC Cre-recombinase driver lines to study the functional organization of cerebral cortical and basal ganglia circuits. Neuron 80: 1368–1383. [ PMC free article] [ PubMed] [ Google Scholar] We want to change the formatting so that this text no longer overflows, but stops when it reaches the end of the cell.
Cross-Linking and Immunoprecipitation (CLIP) The Future of Cross-Linking and Immunoprecipitation (CLIP)
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149: 1393–1406. [ PubMed] [ Google Scholar] Neuron-specific cTag-CLIP reveals cell-specific diversity of functional RNA regulation in the brain. bioRxiv Huppertz I, Attig J, D’Ambrogio A, Easton LE, Sibley CR, Sugimoto Y, Tajnik M, König J, Ule J. 2014.High-resolution N 6-methyladenosine (m 6A) map using photo-crosslinking-assisted m 6A sequencing. Angew Chem 54: 1587–1590. [ PMC free article] [ PubMed] [ Google Scholar] Enable tabbed editing and reading in Word, Excel, PowerPoint, Publisher, Access, Visio and Project. We have since successfully established a series of cTag mice to perform cTag-CLIP analysis for different RBPs in multiple cell types. We validated this approach using cTag poly(A)-binding protein (PABP; gene symbol: Pabpc1) to generate the cTag-PABP mouse and to establish the cTag-PAPERCLIP technique ( Hwang et al. 2017). cTag-PAPERCLIP uses PABP as a biological filter to specifically clone distal mRNA 3′ ends to generate comprehensive mRNA alternative polyadenylation (APA) maps. With cTag-PAPERCLIP, we performed an in-depth APA analysis of individual cell types in vivo in the adult mouse brain to show the dynamics of APA regulation and discovered a previously unknown role of APA in diversifying protein expression in the brain.
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